CDS
Accession Number | TCMCG007C10411 |
gbkey | CDS |
Protein Id | XP_009125443.1 |
Location | join(302365..302427,302500..303570,303707..304878,304967..305107,305448..305691,305774..306475,306668..306862,306974..307560,307686..307737,307820..308438,308610..308791,308864..309396,309495..309599,309690..309756,309851..309928,310018..310086,310180..310251) |
Gene | LOC103850443 |
GeneID | 103850443 |
Organism | Brassica rapa |
Protein
Length | 1983aa |
Molecule type | protein |
Topology | linear |
Data_file_division | PLN |
dblink | BioProject:PRJNA249065 |
db_source | XM_009127195.3 |
Definition | E3 ubiquitin-protein ligase PRT6 [Brassica rapa] |
EGGNOG-MAPPER Annotation
Sequence
CDS: ATGGAGACCGACTCGCCTCTCTTCGGTTCATTTCTCCCCAGCTCACACGATTCCCTCCTCGAGAGGCTTGCCTTCGTCGGCGTACCTAAAGAACGCTGCTCCAAACAAGCTCTAGTGGAGTTCGTTAGAGCTAACCCTTCCAAAATCTCGGAGATCGTCTCTGCTCTCTTACCTACCGATGAGGAAGTTAAATCCGAATTGAAGGAAACGAGGGAACGGTCTCGGAAGAAGAGGTTTAGTGAGACTATGAATTGGCTTCAGTGGCTGATGTTCGAGGAGGATCCTGGCGTTTCCTTGAGCAATCTCGCTGAGTTGAATGTTGATCAGCGAGGTGTTTGCGGCTCTGTATGGGGACACAATGATATAGCGTATAAGTGTAGGACGTGCGAGAATGATCCGACTTGTGCTATCTGCGTGCCTTGTTTCGAGAATGGGGATCACAAGCTCCACGATTATTCGGTTATTTACACTGGCGGTGGTTGCTGTGATTGTGGGGACGAGACGGCGTGGAAACGGGAGGGTTTCTGTTCCAAGCATAAAGGTTCTGAACAGATTCAGCCCCTCCCTGAGAATCTAGCGAACTCGGTTGGGCCTGTGCTTGATGCGCTTTTTGCTTGTTGGAGTGGCAAGCTCTCATCTGCAGAGAGTATTGTTCAGAAAGATGCTCTTGTAGTACTACTCCAGAAGATGTCAAACGAGTTGACATTTGCGGTAGTTGAAATGCTTCTGGAATTTAGTCAGTCCACTGAGAGTCTGCTGAGTTTCGTTGCTAGAAGGATTATCTCTTCAGGTGGTCTGCTGAATTATCTCGTGAAGGCTGAGAGGTTCTTGGACCAAGATGTAATCAGGAAACTACATGACTTGTTCCTCAAATTGATAGCAGATCCAGTCTTTAAGTCGGAATTTGCAAAAGCATTTGCGAGTTACTATCCAGTTGTGATAAGTGAAGCGGTTAAGCTGGGGAGTGATAATGCATTCAAGAAATTTCCACTGCTGTCTGCATTTTCTGTGCAAATCCTCACGGTGCCAACTCTAACACCATTTCTGGTGAAGGAAATGAATTTTCTGGCTATGCTTTTGGGATGCCTCAATGATATCTTTGTTTCTTGTTCTGGAGAGGATGGTGTGCTACAGGCTACGAAGTGGGAACGGATGTCTGAGATAAGTGACCGTGTCATGGCAGACTTGAAATTTGTTACGAGCCATGTTGTAGTTTCCAAGTATGCAACACATGAACATCGGGAGTTATCAAGATCATGGTTGCTACTCATGACCTTTGCTCAAGGAATGAATCGTATAAAAAGAGAGACTGGAATCCATATTGAAGACGATAATGAGTATATGCATTTATTCTTTGTTTTGGGACATTCAATAGCTGTTATTCACTCTCTGTTGGTTACTGGTACATATTCTGCTGCCAATGATAAAGAAATAGAAAATGAGGGAACCACCAAGGCAGGACTTGACAAGTGTGATGGAGATGGAGAAAGGTATGCAAAAGTTGGGAGATTGTCTCATGAAGATTCGGTATGTACTGCAATGGTAAGCAGCAGCTCCTCTGATAGCTCGATAGTCCCTGAAAACAAAATTGACCCTTTCCGTGCGCGTCTTCCTTCTTCTGCCATATGGTTGATACGCGAGTGTTTGAAAGTTCTGGAGACATGCTTAGAAGATGATGAAGGTATATCAAAATTTCTTTGCAGAAACGTCTCTGGCAGCACGATGTCATGGCCAAAGAGAAAATTTTCAAAGGTTGAAATTGGAAGAAGTGTATCCAGTAGTCTTGCCAGTTCTAGCAGAGATCCGAGTACTGGCTTATCACCTCTATGTGGCGATATACAAACAAATCTTAGCTTGGATAATGTTGATGGATCGAACGGGGAGGTTCAGACTGATGTTAAGGCTTACTCAAGGGGAGTATCTTGCAACTCTTCCGATCCGAATGCATCCGGAGTACATATACTTGGTCTGTGTGATTGGCCGGACATTCTATACGATGTGAGCTCTCAGCCCATATCAGTTCATCTGCCGTTACACCGGTTACTATCTTTGCTCTTACAAAAAGCATTAGAGAGGTGTTATGGAGAATCGGCATTGCACCATGGAGTTAATGTTAGTCATGAGATCCCACAGGCTGACTTCTTCAGCTACGTGATAGGAGATTTCCATCCTTATGGATTTTCTGCACTTGTTATGGAGCATGTGCTCCGCATTAGGGTATTCTGTGCCCAAGTTATTGCTGGAATGTGGAAGAAGAATGCGGATTCTGCGTTAGTAACTTGCGAGTTGTATCGGTCAGTTTGCTGGTCAGAACAGGGACTTGAGCTTGATCTATTTCTTCTGCAGTGTTGTGGTGCGTTGGCTCCCGCAGATTCTTATGTTAATAAGCTTCTCGACCGATTTGGGCTCTCGAGCTATCTTTCACTAAACCCCAATATGACAAATGAGTATGAAGCAGTTTTGGTCCAGGAAATGCTTGCTCTTCTGATACAGATCCTGCAAGAAAGGCGATTTTGTGGTCTTTCTACTGTTGAAAGTTTGAGAAGAGAGATCATATTCAAGTTAGCCACTGGAGATTTCACTCATAGTCAATTGGTCAAATCTTTACCCCGTGACCTGTCCAAGTCGGATGAGCTCCAGGAGGTCTTAGACAACGTTTCAGTATATTGTAATCCATCCGGCATGAACCAGGGAAAGTATTCACTACGGTCATCTTGTTGGAAGGAATTGGATCTCTACCACCCTCGTTGGCATTCGAGAGAGTTGCAATCTGCAGAAGAAAGATTTTCACGCTATTGTGGAGTGTCTGCGGTGACCACTCAGCTTCCTAGGTGGAGAATGATCTATCCGCCGCTAAAGGGACTTTCTAGAATCGGCACTTGCAAAGCCACATTTCAAATCATTTGCTCTACTTTATACTACGCACTACAGAGTGGTTCATCTGTTAAATCACGCGCTCAAGATGGCGTTCTCATAAGTGCATTGCACTTACTCTCGTTATCATTGGATATTTGCACTCAGCAAAGGGGATCTAATATTCAGGCTTGTTGCGTAGAAGATTCTATTCCGATTCTCGAATTAGCTGGTCTAGAAATAATTGGTCTAAATCAAGGGACTGGAAAAGAAAGTTTGTTGTCTCTTCTTGTTTCATTAATGAGGACCCGTGAAGGAGATGGTCTCCATCAATTTCCAGAGGCAGGCAGTTGTAATATTTCGTCCTGGATTGGAAACTTGCTCAAGAAGTTCAGTGAAATTGATTCTGTTTGTATGAACCTATTGCAAAGTCTTGCCCCGGAGGTGGTCGGTCACTCTGTCTTTGACAAAGCCACATCAGGCTCTGCTTCTGATGACACACGCAAGGCTAAAGCTAGAGAGAGGCAGGCTGCTATTCTGGCAAAAATGAAAGCTGAACAATCAAAATTCTTGTCTACAATGAGTTCCAGCATGGATGATGATGATCTAAGATCTGAAACTGAAACAAGTGATTCCGTAGTGGAACATGATTCAGAAATTGCTATTCGTGAAGTTTGCTCCTTCTGCCATGACCCAGATTCCAAAGACTCGGTTTCTTTCTTGATTTTTCTCCAGAAATCTAAACTTTTGAGTTTTGTGAATAGAGGCCCTCCATCTTGGGATCAATGTCCACAATCTGAAAAGAAGATACCCATGGATGAAGCTCCCGATCTCCAGAGAATAAATGTTTCCTCAGACAGTTTAAGAATGATTTCTCATGTGCTGCAGCTGTCAGATGATGCAACCTCCGAGTCTGCTACAGATTATGTGCTTGAGGCTTTAACAGCCCGGCTTTTAGGGAATGGTCAGAAGGAGAAGAGGTCTAGCGATGCGAGGGGAAAAGATGAATCTAACTTGGAGTCATTGGAAACAGCTATGTATCAAACTGTTCGCAAAAAAACTGAAAACATGCTAAATCAAAGCCTTACACATGTAAATCATCGACAGCCTGATTCTGAAAGTAGTTCGGAGAGGAGTTCCGTTGGTGGTCTATCTACTTTGCATAGGTTTCAAGATATTCGATCAAAACAAACCTCCAGATATCTGGATGTCAGTGCAGATGGGTTTCACCCTGCCGACTGTGATGGGATTTATCTTTCATCATGTGGACATGCTGTGCATCAAAGCTGTCTTGAACGATATTTAAACTCGTTAAAAGAAAGGTCTGACAGGAGAAATGTTTTTGAAGGTGCACATATAGTGGATCTTGTACAGGGAGAATTTCTCTGTCCTGCATGCCGCCGACTAGCTAATTCTGTGTTGCCTGCATGTCCTGTAGACCTATGTTCTGTATCAAAGCTACAAGAAAGTTCGCATGCTAAGTTAGGTAGATTAGATGAACAGATACCTTCTCTTTGGCTCTCTGAAGCGTTGTGTCTACTACAGTCTGCTGCTAACGTGATCGAAGATGGTGATACTCTTAAAACAGTATCTCTGCAGGGAGATGAGCCAAGAAGAAAAGATCTTCAATCTGTCTCCAACAAGCTCTGGAATTTCTATTTTTCTAAGCGACAGGAAAAACCTCCGGGAAGTTCTTGGCTACCACAATCGATCATCATGTGGGACACCCTTAAGTACTCTCTAATTTCAATGGAAATTGTGACTCGTTGTGGGAAGAATACAATGCTTCCTGTCTATGGTATTGACTCCTTGTATGAAGAGTTTAAAACCTCTAAGGGAATTGCTTTGTCACTCTTATTACGAGTGGTACAGAGCACCCGGACAAAGAATGCTTTACATGTTCGTCAGAGATTTATGGGTATGAAATATCTTGCGGAGTCTATATGCTCTGGAATGTCAAGTACTTCTTCAAGCAGCATATTTGAAAGTGAAGGCGCAGCAGGTTCGTGGAAGAATATAAACCTGCTATGGAGTCGAGCATCTGATCCAGTTCTTGCCCATGACCCATTTTCATCACTGATGTGGGCTCTCTTTTGTCTCCCATCTCCTTTCATCACATGCGAGGAATCTCTATTATCAATTGTGCATATTTTCTACAGTGTCTCTGTTATTCAGACTGTAATTACATATTGTGCAGGTCGCCTGTGTTACACTAGTGAGTTAGATTTCAAAGAAAATCTGCTTAGCGACATCTCCATAGCTTTGAGAGAATCAGGTGGTTGGGAGTATTTCAGGTCTAATAATATGGATTTATCATGTGATATAAAAGAGACGATCCGTAAATATAGTCTTCCTTTTCTGAGGAGATGTGCGTTGTTGTGGAGGTTACTTAAAACTGCGCCTGGGAAGTTTCATGAAGAGGTACATATGTTCGATGTGCCATCTGACTCCAACAGCCACTATATGGATTTCATGTATAGTCCTCAATCTGAGCTGAAGCATGTGGATGAACTGGAGAAAATGTTCAAGATTCCTCCCATTGATACCGTTATCAATGATGAACTTCTCTGGTCTTCATCGCAAACATGGCTTCGACATTTCCAGATGGAATACAGAGTCAACAGAGTCAAAGGGCCCCTTTGCATAACCCCTTTAGTTCCTTTCCAGCTTATGAAATTACCCAATCTATACCAGGACCTATTGCAAAGGTATATTAAAAAGCCTTGCAGCAATTGCACGAAAGTTATTGAAGAACCTGCACTATGTCTTCTCTGTGGAAGATTGTGTTCTCCTATATGGAGACCTTGTTGCAGAGAAAGTGGTTGTCAGACTCATGCAGTCACATGTGGTGCTGGTACTGGTGTATATCTTCTGATACGGCGGACTACAATTTTGCTACAAAGATTTGCAAGACAATCACCTTGGCCATCTCCTTATTTGGATACATTTGGAGAAGAGGATATTGAGATGGCCAGAGGGAAACCACTATACCTGAATGAAGAACGCTATGCTGCGTTAACATACATGGTTGGATCTCATGGACTCGATCATAGCTCGAAAGTTCTCAACCAAACCACAATCGGAGCCTTCTTAACTTAA |
Protein: METDSPLFGSFLPSSHDSLLERLAFVGVPKERCSKQALVEFVRANPSKISEIVSALLPTDEEVKSELKETRERSRKKRFSETMNWLQWLMFEEDPGVSLSNLAELNVDQRGVCGSVWGHNDIAYKCRTCENDPTCAICVPCFENGDHKLHDYSVIYTGGGCCDCGDETAWKREGFCSKHKGSEQIQPLPENLANSVGPVLDALFACWSGKLSSAESIVQKDALVVLLQKMSNELTFAVVEMLLEFSQSTESLLSFVARRIISSGGLLNYLVKAERFLDQDVIRKLHDLFLKLIADPVFKSEFAKAFASYYPVVISEAVKLGSDNAFKKFPLLSAFSVQILTVPTLTPFLVKEMNFLAMLLGCLNDIFVSCSGEDGVLQATKWERMSEISDRVMADLKFVTSHVVVSKYATHEHRELSRSWLLLMTFAQGMNRIKRETGIHIEDDNEYMHLFFVLGHSIAVIHSLLVTGTYSAANDKEIENEGTTKAGLDKCDGDGERYAKVGRLSHEDSVCTAMVSSSSSDSSIVPENKIDPFRARLPSSAIWLIRECLKVLETCLEDDEGISKFLCRNVSGSTMSWPKRKFSKVEIGRSVSSSLASSSRDPSTGLSPLCGDIQTNLSLDNVDGSNGEVQTDVKAYSRGVSCNSSDPNASGVHILGLCDWPDILYDVSSQPISVHLPLHRLLSLLLQKALERCYGESALHHGVNVSHEIPQADFFSYVIGDFHPYGFSALVMEHVLRIRVFCAQVIAGMWKKNADSALVTCELYRSVCWSEQGLELDLFLLQCCGALAPADSYVNKLLDRFGLSSYLSLNPNMTNEYEAVLVQEMLALLIQILQERRFCGLSTVESLRREIIFKLATGDFTHSQLVKSLPRDLSKSDELQEVLDNVSVYCNPSGMNQGKYSLRSSCWKELDLYHPRWHSRELQSAEERFSRYCGVSAVTTQLPRWRMIYPPLKGLSRIGTCKATFQIICSTLYYALQSGSSVKSRAQDGVLISALHLLSLSLDICTQQRGSNIQACCVEDSIPILELAGLEIIGLNQGTGKESLLSLLVSLMRTREGDGLHQFPEAGSCNISSWIGNLLKKFSEIDSVCMNLLQSLAPEVVGHSVFDKATSGSASDDTRKAKARERQAAILAKMKAEQSKFLSTMSSSMDDDDLRSETETSDSVVEHDSEIAIREVCSFCHDPDSKDSVSFLIFLQKSKLLSFVNRGPPSWDQCPQSEKKIPMDEAPDLQRINVSSDSLRMISHVLQLSDDATSESATDYVLEALTARLLGNGQKEKRSSDARGKDESNLESLETAMYQTVRKKTENMLNQSLTHVNHRQPDSESSSERSSVGGLSTLHRFQDIRSKQTSRYLDVSADGFHPADCDGIYLSSCGHAVHQSCLERYLNSLKERSDRRNVFEGAHIVDLVQGEFLCPACRRLANSVLPACPVDLCSVSKLQESSHAKLGRLDEQIPSLWLSEALCLLQSAANVIEDGDTLKTVSLQGDEPRRKDLQSVSNKLWNFYFSKRQEKPPGSSWLPQSIIMWDTLKYSLISMEIVTRCGKNTMLPVYGIDSLYEEFKTSKGIALSLLLRVVQSTRTKNALHVRQRFMGMKYLAESICSGMSSTSSSSIFESEGAAGSWKNINLLWSRASDPVLAHDPFSSLMWALFCLPSPFITCEESLLSIVHIFYSVSVIQTVITYCAGRLCYTSELDFKENLLSDISIALRESGGWEYFRSNNMDLSCDIKETIRKYSLPFLRRCALLWRLLKTAPGKFHEEVHMFDVPSDSNSHYMDFMYSPQSELKHVDELEKMFKIPPIDTVINDELLWSSSQTWLRHFQMEYRVNRVKGPLCITPLVPFQLMKLPNLYQDLLQRYIKKPCSNCTKVIEEPALCLLCGRLCSPIWRPCCRESGCQTHAVTCGAGTGVYLLIRRTTILLQRFARQSPWPSPYLDTFGEEDIEMARGKPLYLNEERYAALTYMVGSHGLDHSSKVLNQTTIGAFLT |